what special features of the dbd allow it to bind to dna wrapped on a nucleosome? course hero

by Dr. Irwin Padberg II 10 min read

What are the rules for DNA base pairing?

The DNA is wrapped tightly around the histone core. This nucleosome is linked to the next one by a short strand of DNA that is free of histones. This is also known as the “beads on a string” structure; the nucleosomes are the “beads” and the short …

How are the nucleotides of two strands of DNA bonded?

May 14, 2015 · The DNA is wrapped tightly around the histone core. This nucleosome is linked to the next one by a short strand of DNA that is free of histones. This is also known as the “beads on a string” structure; the nucleosomes are the “beads” and …

What is the DNA model of DNA base pairing?

Based on Griffith’s experiment, Avery and his team isolated DNA and proved DNA to be the genetic material. But it was not accepted by all until Hershey and Chase published their experimental results. In 1952, Alfred Hershey and Martha Chase took an effort to find the genetic material in organisms. Their experiments led to an unequivocal proof ...

Why is the DNA twisted beyond the double helix?

One by one, free nucleotide pair with the bases exposed as the template stands unzips. DNA polymerase bonds the nucleotides together and form new stands complementary to each template. On one template, DNA replication occurs in a smooth, continuous way in one direction. This continuous stand is called the leading stand.

How does a nucleosome bind to DNA?

Today, researchers know that nucleosomes are structured as follows: Two each of the histones H2A, H2B, H3, and H4 come together to form a histone octamer, which binds and wraps approximately 1.7 turns of DNA, or about 146 base pairs.

What does DNA need to wrap around to become a nucleosome?

As shown in the animation, a DNA molecule wraps around histone proteins to form tight loops called nucleosomes. These nucleosomes coil and stack together to form fibers called chromatin. Chromatin, in turn, loops and folds with the help of additional proteins to form chromosomes.May 2, 2003

What kind of interaction facilitates the DNA binding to the nucleosome?

Interaction of HMGB1 with mononucleosomes. Several proteins, among them histone H1 and HMGB1, that are able to interact with bent or otherwise distorted DNA (Lilley, 1992; Varga-Weisz et al., 1994) are also known to bind DNA at the entry points into the nucleosome.

What happens to a gene when it is wrapped tightly around a histone?

The double helix of DNA is then wrapped around certain proteins known as histones. This allows the DNA to be more tightly wrapped and therefore take up less space within the cell. The DNA can condense even further by the histones coming into close proximity to each other.May 22, 2019

What is DNA wrapped around?

Nuclear DNA does not appear in free linear strands; it is highly condensed and wrapped around histones in order to fit inside of the nucleus and take part in the formation of chromosomes. Histones are basic proteins, and their positive charges allow them to associate with DNA, which is negatively charged.

What is wrapped around the protein structures that makes up the compacted structure?

DNA wraps around histone proteins, forming nucleosomes and the so-called beads on a string structure (euchromatin). Multiple histones wrap into a 30-nanometer fiber consisting of nucleosome arrays in their most compact form (heterochromatin).

What are the two major interactions responsible for the binding of histone proteins to DNA?

Hydrogen bonds between the DNA backbone and the amide group on the main chain of histone proteins. Nonpolar interactions between the histone and deoxyribose sugars on DNA.

What are the two major interactions responsible for the binding of histone proteins to DNA and how do you know?

Electrostatic interactions and hydrogen bonds between histones and DNA are vital for the stable organization of nucleosome core particles, and for the folding of chromatin into more compact structures, which regulate gene expression via controlled access to DNA.Dec 21, 2020

How do histones and DNA interact to assemble into a nucleosome?

The nucleosome assembly reaction has two steps: histones H3 and H4 are deposited onto DNA as an H3/H4 tetramer in the first step, to form a nucleosome precursor; in the second step, the nucleosome is com- pleted by the association of two H2A/H2B dimers with this precursor.

How do transcription factors bind DNA when it is wrapped around chromatin?

Because eukaryotic DNA is tightly wrapped around nucleosomes and the positive charges of the histones tightly bind the negative charges of the DNA, nucleosomes essentially act as a physical barrier to transcription factors that need to bind to certain regions of DNA.

Why does DNA need to be packed tightly?

Chromatin gives structure to a chromosome. DNA packaging helps the DNA to fit well within the small size of a cell. It also facilitates the easy separation of the correct chromosomes during cell division. Due to highly packed DNA, it is easy to turn genes on or off as per requirement.

How does DNA packaging regulate gene expression?

Chromatin packing also offers an additional mechanism for controlling gene expression. Specifically, cells can control access to their DNA by modifying the structure of their chromatin. Highly compacted chromatin simply isn't accessible to the enzymes involved in DNA transcription, replication, or repair.

Who were the two scientists who were awarded the Nobel Prize for their work in determining the structure of DNA?

This meant they were always paired in some way. In 1962, James Watson, Francis Crick, and Maurice Wilkins were awarded the Nobel Prize in Medicine for their work in determining the structure of DNA. Figure 9.2 Pioneering scientists (a) James Watson and Francis Crick are pictured here with American geneticist Maclyn McCarty.

Why is DNA protected?

DNA is a working molecule; it must be replicated when a cell is ready to divide, and it must be “read” to produce the molecules, such as proteins, to carry out the functions of the cell. For this reason, the DNA is protected and packaged in very specific ways. In addition, DNA molecules can be very long.

How many types of nitrogenous bases are there in DNA?

There are four types of nitrogenous bases in DNA. Adenine (A) and guanine (G) are double-ringed purines, and cytosine (C) and thymine (T) are smaller, single-ringed pyrimidines. The nucleotide is named according to the nitrogenous base it contains.

What did Crick and Watson discover about DNA?

In the 1950s, Francis Crick and James Watson worked together at the University of Cambridge, England, to determine the structure of DNA. Other scientists, such as Linus Pauling and Maurice Wilkins, were also actively exploring this field. Pauling had discovered the secondary structure of proteins using X-ray crystallography. X-ray crystallography is a method for investigating molecular structure by observing the patterns formed by X-rays shot through a crystal of the substance. The patterns give important information about the structure of the molecule of interest. In Wilkins’ lab, researcher Rosalind Franklin was using X-ray crystallography to understand the structure of DNA. Watson and Crick were able to piece together the puzzle of the DNA molecule using Franklin's data ( Figure 9.2 ). Watson and Crick also had key pieces of information available from other researchers such as Chargaff’s rules. Chargaff had shown that of the four kinds of monomers (nucleotides) present in a DNA molecule, two types were always present in equal amounts and the remaining two types were also always present in equal amounts. This meant they were always paired in some way. In 1962, James Watson, Francis Crick, and Maurice Wilkins were awarded the Nobel Prize in Medicine for their work in determining the structure of DNA.

What did Chargaff show about DNA?

Chargaff had shown that of the four kinds of monomers (nucleotides) present in a DNA molecule, two types were always present in equal amounts and the remaining two types were also always present in equal amounts. This meant they were always paired in some way.

How many strands are in DNA?

In its natural state, each DNA molecule is actually composed of two single strands held together along their length with hydrogen bonds between the bases. Watson and Crick proposed that the DNA is made up of two strands that are twisted around each other to form a right-handed helix, called a double helix.

How do phosphate groups form DNA?

The sugar–phosphate groups line up in a “backbone” for each single strand of DNA , and the nucleotide bases stick out from this backbone. The carbon atoms of the five-carbon sugar are numbered clockwise from the oxygen as 1', 2', 3', 4', and 5' (1' is read as “one prime”). The phosphate group is attached to the 5' carbon of one nucleotide and the 3' carbon of the next nucleotide. In its natural state, each DNA molecule is actually composed of two single strands held together along their length with hydrogen bonds between the bases.

Who were the two scientists who were awarded the Nobel Prize for their work in determining the structure of DNA?

This meant they were always paired in some way. In 1962, James Watson, Francis Crick, and Maurice Wilkins were awarded the Nobel Prize in Medicine for their work in determining the structure of DNA. Figure 9.2 Pioneering scientists (a) James Watson and Francis Crick are pictured here with American geneticist Maclyn McCarty.

Why is DNA protected?

DNA is a working molecule; it must be replicated when a cell is ready to divide, and it must be “read” to produce the molecules, such as proteins, to carry out the functions of the cell. For this reason, the DNA is protected and packaged in very specific ways. In addition, DNA molecules can be very long.

How many types of nitrogenous bases are there in DNA?

There are four types of nitrogenous bases in DNA. Adenine (A) and guanine (G) are double-ringed purines, and cytosine (C) and thymine (T) are smaller, single-ringed pyrimidines. The nucleotide is named according to the nitrogenous base it contains.

What did Crick and Watson discover about DNA?

In the 1950s, Francis Crick and James Watson worked together at the University of Cambridge, England, to determine the structure of DNA. Other scientists, such as Linus Pauling and Maurice Wilkins, were also actively exploring this field. Pauling had discovered the secondary structure of proteins using X-ray crystallography. X-ray crystallography is a method for investigating molecular structure by observing the patterns formed by X-rays shot through a crystal of the substance. The patterns give important information about the structure of the molecule of interest. In Wilkins’ lab, researcher Rosalind Franklin was using X-ray crystallography to understand the structure of DNA. Watson and Crick were able to piece together the puzzle of the DNA molecule using Franklin’s data ( Figure 9.2 ). Watson and Crick also had key pieces of information available from other researchers such as Chargaff’s rules. Chargaff had shown that of the four kinds of monomers (nucleotides) present in a DNA molecule, two types were always present in equal amounts and the remaining two types were also always present in equal amounts. This meant they were always paired in some way. In 1962, James Watson, Francis Crick, and Maurice Wilkins were awarded the Nobel Prize in Medicine for their work in determining the structure of DNA.

What did Chargaff show about DNA?

Chargaff had shown that of the four kinds of monomers (nucleotides) present in a DNA molecule, two types were always present in equal amounts and the remaining two types were also always present in equal amounts. This meant they were always paired in some way.

How do phosphate groups form DNA?

The sugar–phospha te groups line up in a “backbone” for each single strand of DNA , and the nucleotide bases stick out from this backbone. The carbon atoms of the five-carbon sugar are numbered clockwise from the oxygen as 1′, 2′, 3′, 4′, and 5′ (1′ is read as “one prime”). The phosphate group is attached to the 5′ carbon of one nucleotide and the 3′ carbon of the next nucleotide. In its natural state, each DNA molecule is actually composed of two single strands held together along their length with hydrogen bonds between the bases.

How many base pairs are there in Escherichia coli?

The size of the genome in one of the most well-studied prokaryotes, Escherichia coli, is 4.6 million base pairs, which would extend a distance of about 1.6 mm if stretched out. So how does this fit inside a small bacterial cell? The DNA is twisted beyond the double helix in what is known as supercoiling. Some proteins are known to be involved in the supercoiling; other proteins and enzymes help in maintaining the supercoiled structure.

Who discovered the genetic material in organisms?

But it was not accepted by all until Hershey and Chase published their experimental results. In 1952, Alfred Hershey and Martha Chase took an effort to find the genetic material in organisms.

What was the Hershey and Chase experiment?

Their experiments led to an unequivocal proof to DNA as genetic material. Bacteriophages (viruses that affect bacteria) were the key element for Hershey and Chase experiment . The virus doesn’t have their own mechanism of reproduction but they depend on a host for the same. Once they attach to the host cell, their genetic material is transferred ...

Is DNA a protein?

Hence, DNA is the genetic material and not the protein. For more video lessons on DNA as genetic material, visit BYJU’S. Test your Knowledge on DNA! Put your understanding of this concept to test by answering a few MCQs. Click ‘Start Quiz’ to begin!

How does DNA serve as its own template during replication?

Explain how DNA serves as its own template during replication. A new strand of DNA can be synthesized when the other strand is a template to guide the process. Every time the order of the bases is pres erved and DNA can be accurately replicated over and over again.

What are the four bases of DNA?

The DNA of all organisms contains the same four bases (adenine, thymine, cytosine, and guanine .) what might this similarity indicate about life on earth?

Why does replication take so long?

Each Chromosome in a Eukaryotic cell is very long, if replication started at one place, it would take forever to be finished because there are billions of nucleotides per strand of DNA. So multiple origins of replication are needed to make the process go faster.

Why is DNA replication considered semiconservative?

As a result, DNA replication is called semiconservative because one old stand is conserved, and one new strand is made. explain the function of replication. Replication assures that every cell has a complete set of identical, genetic information and make a copy of the DNA so it can be passed to the new cell.

How many types of nucleotides are there in DNA?

There are four types of nucleotides in DNA. They differ in their nitrogen-containing bases

Why is rRNA needed?

rRna is a component to of ribosomes, and many ribosomes are needed to keep up with the level of protein synthesis needed by a cell. However, each cell needs only one set of DNA so it is copied only in preparation for cell division

What technique did Rosalind Franklin use to shape DNA?

Rosalind Franklin used a technique called x-ray crystallography, which shaped the atoms of DNA in a pattern of and X indicating the DNA was, in fact, a double helix molecule.

Which cell has a nucleus?

Unlike prokaryotic cells, in which DNA is loosely contained in the nucleoid region, eukaryotic cells possess a nucleus, which is surrounded by a complex nuclear membrane that houses the DNA genome (Figure 3). By containing the cell’s DNA, the nucleus ultimately controls all activities of the cell and also serves an essential role in reproduction and heredity. Eukaryotic cells typically have their DNA organized into multiple linear chromosomes. The DNA within the nucleus is highly organized and condensed to fit inside the nucleus, which is accomplished by wrapping the DNA around proteins called histones.

Which organelle holds the endoplasmic reticulum in place?

Organelles such as mitochondria, the endoplasmic reticulum (ER), Golgi apparatus, lysosomes, and peroxisomes are held in place by the cytoskeleton, an internal network that supports transport of intracellular components and helps maintain cell shape (Figure 1).

What is the function of peroxisomes in a cell?

The illustration (right) shows the location of peroxisomes in a cell. These eukaryotic structures play a role in lipid biosynthesis and breaking down various molecules. They may also have other specialized functions depending on the cell type. (credit “micrograph”: modification of work by American Society for Microbiology)

What are the characteristics of eukaryotic cells?

Also, eukaryotic cells are characterized by the presence of membrane-bound organelles in the cytoplasm.

Why do eukaryotic cells not have cell walls?

Cells of animals and some protozoans do not have cell walls to help maintain shape and provide structural stability. Instead, these types of eukaryotic cells produce an extracellular matrix for this purpose. They secrete a sticky mass of carbohydrates and proteins into the spaces between adjacent cells (Figure 19). Some protein components assemble into a basement membrane to which the remaining extracellular matrix components adhere. Proteoglycans typically form the bulky mass of the extracellular matrix while fibrous proteins, like collagen, provide strength. Both proteoglycans and collagen are attached to fibronectin proteins, which, in turn, are attached to integrin proteins. These integrin proteins interact with transmembrane proteins in the plasma membranes of eukaryotic cells that lack cell walls.

What are the different shapes of eukaryotic cells?

Possible shapes include spheroid, ovoid, cuboidal, cylindrical, flat, lenticular, fusiform, discoidal, crescent, ring stellate, and polygonal (Figure 2). Some eukaryotic cells are irregular in shape, and some are capable of changing shape. The shape of a particular type of eukaryotic cell may be influenced by factors such as its primary function, the organization of its cytoskeleton, the viscosity of its cytoplasm, the rigidity of its cell membrane or cell wall (if it has one), and the physical pressure exerted on it by the surrounding environment and/or adjoining cells.

Where are ribosomes found in the cell?

Free ribosomes are found in the cytoplasm and serve to synthesize water-soluble proteins; membrane-bound ribosomes are found attached to the rough endoplasmic reticulum and make proteins for insertion into the cell membrane or proteins destined for export from the cell.

What is the function of DNA?

answer choices. DNA contains codes for proteins, which are necessary for the growth and functioning of an organism. DNA separates into long single strands that make up each part of an organism. DNA produces the energy an organism needs in order to grow. DNA folds into the nucleus of each of the cells of an organism.

What determines the type of RNA that will be produced?

the number of adenines and cytosines determines the type of RNA that will be produced. the order of nitrogenous bases determines the order of amino acids in the proteins synthesized. the amount of thymine and guanine in the DNA molecules determines the length of the genes.

What determines which amino acid will be added to the peptide chain?

the type of hydrogen bonding between the nitrogenous bases determines which amino acid will be added to the peptide chain. Each strand of a DNA molecule contains nitrogenous bases that pair with other nitrogenous bases in very specific ways. A diagram of a section of DNA is shown.

What are characteristics such as a widow's peak or attached earlobes determined by?

Characteristics such as a widow's peak or attached earlobes are determined by the genetic code. Which components of DNA are referred to as the genetic code?

Who took the first x-ray of DNA?

In 1952 Rosalind Franklin took the x-ray photograph shown, which gave the world its first look at DNA. By studying this photograph, scientists gained knowledge about the -

How many components are in nucleic acids?

Eight components present in nucleic acids are listed in the box. Which components bond with adenine in a section of double-stranded DNA?